Examples
====================

**all experiment commands execeute from `scripts/slurm_launch/`**

    
Starting Example
--------------------
- Once you've installed all the packages :ref:`Installation`::
    cd scripts/slurm_launch/
    sh neuron_batch_simple.sh

launches a sequential version of EA with NEURON


Download Data and Plot
-----------------------------------
- WARNING: the dataset is pretty big since the log files got pretty large. It may take some time to install based on download speed.
- ``cd benchmark_ea/``
- ``rm -r data`` (be careful this may remove data if you have generated some)
- ``wget https://portal.nersc.gov/cfs/m2043/benchmarking_ea.tar.gz`` install dataset and extract it ``tar -xvf benchmarking_ea.tar.gz``
- then ``mv`` data to it's location: ``benchmark_ea/data``, technically ``benchmark_ea/benchmark_ea/data`` if include the wrapper directory.
- ``cd benchmark_ea/scripts/plotting_scripts``
and then run all of the plotting scripts::

    sh plot_all_coreneuron.sh
    sh plot_all_neuroGPU.sh
    sh plot_all_neuron.sh