Shell Scripts

Starting Example

• Once you’ve installed all the packages ( Options for Installation: )

  cd scripts/slurm_launch/ sh neuron_batch_simple.sh

launches a sequential version of EA with NEURON

Launch EA Once

• Parallel veriosn of Neuron: sh neuron_batch.sh

  • requires iPyParallel

• Launch NeuroGPU EA sh neurogpu_batch.sh

• Launch Coreneuron EA sh coreneuron_batch.sh

Launch EA with SLURM job chaining

• You may need to add details to SLURM header

• Chain Neuron EA SLURM jobs: sh neuron_chain_jobs.sh plans/main_plans/Compute_Fixed_and_Problem_Scales

• Chain GPU SLURM jobs: sh gpu_chain_jobs.sh plans/main_plans/Compute_Fixed_and_Problem_Scales <simulator name here>

  • choose either NeuroGPU or Coreneuron