Examples

all experiment commands execeute from `scripts/slurm_launch/`

Starting Example

• Once you’ve installed all the packages Options for Installation::

  cd scripts/slurm_launch/ sh neuron_batch_simple.sh

launches a sequential version of EA with NEURON

Download Data and Plot

• WARNING: the dataset is pretty big since the log files got pretty large. It may take some time to install based on download speed.

• cd benchmark_ea/

• rm -r data (be careful this may remove data if you have generated some)

• wget https://portal.nersc.gov/cfs/m2043/benchmarking_ea.tar.gz install dataset and extract it tar -xvf benchmarking_ea.tar.gz

• then mv data to it’s location: benchmark_ea/data, technically benchmark_ea/benchmark_ea/data if include the wrapper directory.

• cd benchmark_ea/scripts/plotting_scripts

and then run all of the plotting scripts:

sh plot_all_coreneuron.sh
sh plot_all_neuroGPU.sh
sh plot_all_neuron.sh